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Job Name
Enter a name to identify this binding affinity analysis. For example, 'binding_affinity_test1'. A simple and clear name is recommended.
Input PDB Files
Upload the complex structure file(s) in PDB format containing two proteins. Drag and drop or click to select your files.
Drag & Drop or Click to Browse (Supported: .pdb)
Distance Cutoff (Å)
Set the maximum distance (in Å) between atoms to define interacting contacts. Recommended default is 5.0 Å.
1
10
Acc Threshold (Ų)
Set the accessible surface area (ASA) threshold (in Ų) used to identify interface residues. Recommended default is 1.0 Ų.
0
1
Temperature (C)
Set the temperature (in °C) for binding affinity calculation. Default experimental condition is 25°C.
0
50
Selection Chains
Specify the chains to include in the analysis. Examples: 'A B', 'A,B C', 'A B C'. Separate chains by spaces or commas.
Contact List
Choose whether to output a detailed list of residue-residue contacts. Recommended to keep 'Deactivate' unless needed.
Activate
DeActivate
Pymol Selection
Choose whether to generate Pymol-compatible selection outputs for visualization. Recommended to keep 'Deactivate' for general use.
Activate
DeActivate
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